A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv1160435



Internal ID18956451
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr16:77167586..77188973hg38UCSC Ensembl
Outerchr16:77160222..77193772hg38UCSC Ensembl
Innerchr16:77201483..77222870hg19UCSC Ensembl
Outerchr16:77194119..77227669hg19UCSC Ensembl
Cytoband16q23.1
Allele length
AssemblyAllele length
hg3833551
hg1933551
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv125n111
Supporting Variantsnssv4038987, nssv4038988
Samples
Known GenesMON1B
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nsv1160435
Frequency
Sample Size369
Observed Gain2
Observed Loss0
Observed Complex0
Frequencyn/a


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