A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv1160070



Internal ID18956974
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:128225754..128299439hg38UCSC Ensembl
Outerchr12:128223477..128299998hg38UCSC Ensembl
Innerchr12:128710299..128783984hg19UCSC Ensembl
Outerchr12:128708022..128784543hg19UCSC Ensembl
Cytoband12q24.32
Allele length
AssemblyAllele length
hg3876522
hg1976522
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv4031562
Samples
Known GenesMIR3612, TMEM132C
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nsv1160070
Frequency
Sample Size369
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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