Variant Details

Variant: nsv1160019

Internal ID

18956765

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr1:209908268..209910639	hg38	UCSC Ensembl
Outer	chr1:209897717..209913207	hg38	UCSC Ensembl
Inner	chr1:210081613..210083984	hg19	UCSC Ensembl
Outer	chr1:210071062..210086552	hg19	UCSC Ensembl

Cytoband

1q32.2

Allele length

Assembly	Allele length
hg38	15491
hg19	15491

Variant Type

OTHER complex

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv4026132, nssv4026066, nssv4026118, nssv4026061, nssv4026076, nssv4026091, nssv4026060, nssv4026120, nssv4026098, nssv4026063, nssv4026133, nssv4026056, nssv4026104, nssv4026108, nssv4026069, nssv4026109, nssv4026116, nssv4026071, nssv4026103, nssv4026115, nssv4026075, nssv4026122, nssv4026083, nssv4026095, nssv4026081, nssv4026097, nssv4026054, nssv4026077, nssv4026130, nssv4026117, nssv4026052, nssv4026089, nssv4026114, nssv4026070, nssv4026053, nssv4026078, nssv4026112, nssv4026119, nssv4026088, nssv4026064, nssv4026127, nssv4026051, nssv4026126, nssv4026093, nssv4026131, nssv4026128, nssv4026123, nssv4026058, nssv4026125, nssv4026094, nssv4026111, nssv4026099, nssv4026080, nssv4026050, nssv4026134, nssv4026065, nssv4026087, nssv4026059, nssv4026073, nssv4026082, nssv4026086, nssv4026121, nssv4026067, nssv4026129, nssv4026107, nssv4026110, nssv4026106, nssv4026072, nssv4026092, nssv4026074, nssv4026100, nssv4026055, nssv4026105, nssv4026062, nssv4026049, nssv4026084, nssv4026096, nssv4026085

Samples

Known Genes

Method

SNP array

Analysis

1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.

Platform

Affymetrix SNP Array 6.0

Comments

Reference

Lou_et_al_2015

Pubmed ID

26073780

Accession Number(s)

nsv1160019

Frequency

Sample Size	369
Observed Gain	1
Observed Loss	77
Observed Complex	0
Frequency	n/a