A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv1160012



Internal ID18956151
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:32134325..32146159hg38UCSC Ensembl
Outerchr12:32128811..32150466hg38UCSC Ensembl
Innerchr12:32287259..32299093hg19UCSC Ensembl
Outerchr12:32281745..32303400hg19UCSC Ensembl
Cytoband12p11.21
Allele length
AssemblyAllele length
hg3821656
hg1921656
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv4031322
Samples
Known GenesBICD1
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nsv1160012
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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