A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv1159879



Internal ID18957034
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:55595864..55606555hg38UCSC Ensembl
Outerchr11:55593955..55606572hg38UCSC Ensembl
Innerchr11:55363340..55374031hg19UCSC Ensembl
Outerchr11:55361431..55374048hg19UCSC Ensembl
Cytoband11q11
Allele length
AssemblyAllele length
hg3812618
hg1912618
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv4030689
Samples
Known GenesOR4C11
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nsv1159879
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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