A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv1159871



Internal ID19304001
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:199342382..199387091hg38UCSC Ensembl
Outerchr1:199335962..199387388hg38UCSC Ensembl
Innerchr1:199311510..199356219hg19UCSC Ensembl
Outerchr1:199305090..199356516hg19UCSC Ensembl
Cytoband1q32.1
Allele length
AssemblyAllele length
hg3851427
hg1951427
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv4026044
Samples
Known Genes
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nsv1159871
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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