A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv1159790



Internal ID18956358
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:344351..484204hg38UCSC Ensembl
Outerchr11:340219..491334hg38UCSC Ensembl
Innerchr11:344351..484204hg19UCSC Ensembl
Outerchr11:340219..491334hg19UCSC Ensembl
Cytoband11p15.5
Allele length
AssemblyAllele length
hg38151116
hg19151116
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv4030243
Samples
Known GenesANO9, B4GALNT4, PKP3, PTDSS2, SIGIRR
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nsv1159790
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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