A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv1159763



Internal ID19303476
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:106868422..106894598hg38UCSC Ensembl
Outerchr10:106866851..106897422hg38UCSC Ensembl
Innerchr10:108628180..108654356hg19UCSC Ensembl
Outerchr10:108626609..108657180hg19UCSC Ensembl
Cytoband10q25.1
Allele length
AssemblyAllele length
hg3830572
hg1930572
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv38n111
Supporting Variantsnssv4030160
Samples
Known GenesSORCS1
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nsv1159763
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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