A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv10810



Internal ID15499087
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr6:29869688..29993638hg38UCSC Ensembl
Outerchr6:29837465..29961415hg19UCSC Ensembl
Outerchr6:29945444..30069394hg18UCSC Ensembl
Outerchr6:29945444..30069394hg17UCSC Ensembl
Cytoband6p21.33
Allele length
AssemblyAllele length
hg38123951
hg19123951
hg18123951
hg17123951
Variant TypeCNV gain+loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv13817, nssv13855, nssv14826, nssv14015, nssv13970, nssv13582, nssv14308, nssv14583, nssv13987, nssv15981, nssv13886, nssv14706, nssv16011, nssv13974, nssv14328, nssv14464, nssv14017, nssv13847, nssv15853, nssv15189, nssv15181, nssv14298, nssv16523, nssv14268, nssv16560, nssv13787, nssv13522, nssv14566, nssv13552, nssv15158, nssv13001, nssv14596, nssv14102, nssv14338, nssv13856, nssv14145, nssv14042, nssv14796, nssv14115, nssv15128, nssv14494, nssv15897, nssv15867, nssv15219, nssv16364, nssv15211
SamplesNA18975, NA10839, NA10847, NA18972, NA18517, NA19144, NA18860, NA07029, NA10863, NA12155, NA18563, NA12740, NA07048, NA18537, NA12872, NA18504, NA18564, NA18942, NA19221, NA18552, NA19132, NA11830, NA19240, NA18853, NA19007, NA18980
Known GenesHCG4B, HCG9, HLA-A, HLA-H
MethodOligo aCGH
AnalysisStatistical threshold = 5.0, minimum +/- log2 ratio = 0.25 and minimum number of probes = 2
PlatformAgilent-015686 Custom Human 244K CGH Microarray
Comments
ReferencePerry_et_al_2008
Pubmed ID18304495
Accession Number(s)nsv10810
Frequency
Sample Size31
Observed Gain25
Observed Loss5
Observed Complex0
Frequencyn/a


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