A curated catalogue of human genomic structural variation

Variant Details

Variant: nsv1043045

Internal ID

19132264

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr11:5773003..5787897	hg38	UCSC Ensembl
Inner	chr11:5794233..5809127	hg19	UCSC Ensembl
Inner	chr11:5750809..5765703	hg18	UCSC Ensembl

Cytoband

11p15.4

Allele length

Assembly	Allele length
hg38	14895
hg19	14895
hg18	14895

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

M

Merged Variants

Supporting Variants

nssv3708421, nssv3708389, nssv3504194, nssv3514324, nssv3522550, nssv3510942, nssv3506215, nssv3708420, nssv3515631, nssv3521810, nssv3708402, nssv3519927, nssv3517745, nssv3521674, nssv3511917, nssv3506672, nssv3505317, nssv3708391, nssv3502759, nssv3504134, nssv3520060, nssv3507422, nssv3505622, nssv3517184, nssv3507240, nssv3708467, nssv3516733, nssv3708453, nssv3513444, nssv3507917, nssv3509165, nssv3708377, nssv3519549, nssv3708407, nssv3503791, nssv3521640, nssv3511541, nssv3708382, nssv3509972, nssv3708404, nssv3708446, nssv3519556, nssv3518681, nssv3708401, nssv3708393, nssv3503525, nssv3518888, nssv3514563, nssv3708395, nssv3518431, nssv3708471, nssv3508144, nssv3517607, nssv3519428, nssv3708450, nssv3708392, nssv3519689, nssv3506533, nssv3520545, nssv3521598, nssv3518580, nssv3518324, nssv3708454, nssv3708406, nssv3504271, nssv3503423, nssv3508232, nssv3507418, nssv3708433, nssv3708443, nssv3515375, nssv3510318, nssv3708386, nssv3506466, nssv3520557, nssv3515734, nssv3708368, nssv3508738, nssv3520266, nssv3510009, nssv3520568, nssv3514805, nssv3515376, nssv3514845, nssv3514696, nssv3512311, nssv3505846, nssv3504969, nssv3518987, nssv3507163, nssv3708462, nssv3517874, nssv3516419, nssv3708457, nssv3708375, nssv3708470, nssv3514903, nssv3518710, nssv3511704, nssv3708473, nssv3708455, nssv3505036, nssv3511313, nssv3511504, nssv3521954, nssv3505108, nssv3511417, nssv3708373, nssv3519096, nssv3511723, nssv3506873, nssv3708372, nssv3517721, nssv3503293, nssv3520745, nssv3708465, nssv3504869, nssv3517751, nssv3518776, nssv3708429, nssv3522266, nssv3514922, nssv3708426, nssv3708403, nssv3503889, nssv3708371, nssv3708390, nssv3514946, nssv3708432, nssv3708476, nssv3708445, nssv3521271, nssv3506884, nssv3510350, nssv3708408, nssv3521877, nssv3708415, nssv3708387, nssv3708466, nssv3519354, nssv3507479, nssv3506809, nssv3708435, nssv3507063, nssv3505249, nssv3708369, nssv3708384, nssv3510945, nssv3514921, nssv3508609, nssv3514207, nssv3509366, nssv3513865, nssv3708430, nssv3708437, nssv3503424, nssv3507360, nssv3503812, nssv3521612, nssv3708458, nssv3708399, nssv3505143, nssv3708378, nssv3514281, nssv3708413, nssv3505049, nssv3513615, nssv3505512, nssv3517837, nssv3519192, nssv3708416, nssv3708414, nssv3510305, nssv3517371, nssv3514572, nssv3515142, nssv3708441, nssv3514576, nssv3503618, nssv3506559, nssv3708370, nssv3708438, nssv3522418, nssv3515488, nssv3509468, nssv3505457, nssv3708379, nssv3513497, nssv3708472, nssv3522102, nssv3517338, nssv3513751, nssv3521084, nssv3515049, nssv3521990, nssv3520211, nssv3512718, nssv3509977, nssv3708383, nssv3508102, nssv3708380, nssv3516619, nssv3708440, nssv3516894, nssv3708427, nssv3510297, nssv3516740, nssv3521094, nssv3509141, nssv3708388, nssv3506872, nssv3708410, nssv3505516, nssv3708376, nssv3708461, nssv3519618, nssv3514117, nssv3507468, nssv3708449, nssv3516490, nssv3510314, nssv3508233, nssv3516057, nssv3513815, nssv3708396, nssv3513227, nssv3507062, nssv3505444, nssv3708456, nssv3508007, nssv3505630, nssv3504112, nssv3507724, nssv3506413, nssv3509695, nssv3507452, nssv3511789, nssv3522417, nssv3510763, nssv3518037, nssv3502782, nssv3708436, nssv3520550, nssv3518983, nssv3708418, nssv3708423, nssv3503305, nssv3515331, nssv3515055, nssv3509427, nssv3504067, nssv3515380, nssv3708474, nssv3513851, nssv3708434, nssv3708475, nssv3502974, nssv3506401, nssv3708385, nssv3521750, nssv3515116, nssv3708464, nssv3708374, nssv3506928, nssv3506750, nssv3708411, nssv3708448, nssv3512020, nssv3708452, nssv3708381, nssv3508585, nssv3512719, nssv3509340, nssv3515352, nssv3507635, nssv3517139, nssv3516902, nssv3507924, nssv3505191, nssv3708428, nssv3520787, nssv3506065, nssv3514216, nssv3505730, nssv3516823, nssv3708394, nssv3518098, nssv3512190, nssv3708424, nssv3507325, nssv3503345, nssv3518967, nssv3510451, nssv3522280, nssv3509995, nssv3516452, nssv3518339, nssv3506093, nssv3708409, nssv3520155, nssv3517237, nssv3708447, nssv3708442, nssv3517543, nssv3511561, nssv3708439, nssv3708412, nssv3510740, nssv3708469, nssv3509820, nssv3505246, nssv3708431, nssv3708397, nssv3512687, nssv3708405, nssv3708425, nssv3522125, nssv3519518, nssv3515625, nssv3509805, nssv3511720, nssv3514443, nssv3519448, nssv3708463, nssv3510716, nssv3503143, nssv3513438, nssv3708468, nssv3708444, nssv3520594, nssv3517129, nssv3508733, nssv3708460, nssv3708451, nssv3708419, nssv3511423, nssv3519820, nssv3504256, nssv3708400, nssv3504551, nssv3515283, nssv3708398, nssv3708459, nssv3708422, nssv3708417

Samples

Known Genes

Method

SNP array

Analysis

Affymetrix SNP array copy number analysis

Platform

Affymetrix SNP Array 6.0

Comments

Reference

Coe_et_al_2014

Pubmed ID

Accession Number(s)

Frequency

Sample Size	11257
Observed Gain	0
Observed Loss	345
Observed Complex	0
Frequency	n/a