A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv622701



Internal ID15474588
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr16:2919880..3043776hg38UCSC Ensembl
Outerchr16:2969881..3093777hg19UCSC Ensembl
Outerchr16:2909882..3033778hg18UCSC Ensembl
Outerchr16:2909882..3033778hg17UCSC Ensembl
Cytoband16p13.3
Allele length
AssemblyAllele length
hg38123897
hg19123897
hg18123897
hg17123897
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv510673
Supporting Variants
SamplesNA18994
Known GenesCCDC64B, CLDN6, CLDN9, FLYWCH1, HCFC1R1, KREMEN2, LINC00514, LOC100128770, PAQR4, PKMYT1, THOC6, TNFRSF12A
MethodOptical mapping
AnalysisSingle-molecule optical maps were assembled into genome-wide consensus maps. These consensus maps were compared to a restriction map generated from the NCBI b35 human genome reference sequence.
PlatformOptical Mapping
Comments
ReferenceTeague_et_al_2010
Pubmed ID20534489
Accession Number(s)nssv622701
Frequency
Sample Size4
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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