A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv622659



Internal ID15474546
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr12:57736515..57798142hg38UCSC Ensembl
Outerchr12:58130298..58191925hg19UCSC Ensembl
Outerchr12:56416565..56478192hg18UCSC Ensembl
Outerchr12:56416565..56478192hg17UCSC Ensembl
Cytoband12q14.1
Allele length
AssemblyAllele length
hg3861628
hg1961628
hg1861628
hg1761628
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv510601
Supporting Variants
SamplesNA18994
Known GenesAGAP2, AVIL, CDK4, CYP27B1, MARCH9, METTL1, METTL21B, MIR6759, TSFM, TSPAN31
MethodOptical mapping
AnalysisSingle-molecule optical maps were assembled into genome-wide consensus maps. These consensus maps were compared to a restriction map generated from the NCBI b35 human genome reference sequence.
PlatformOptical Mapping
Comments
ReferenceTeague_et_al_2010
Pubmed ID20534489
Accession Number(s)nssv622659
Frequency
Sample Size4
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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