A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv622485



Internal ID15474372
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr11:57721329..57792573hg38UCSC Ensembl
Outerchr11:57488801..57560045hg19UCSC Ensembl
Outerchr11:57245377..57316621hg18UCSC Ensembl
Outerchr11:57245377..57316621hg17UCSC Ensembl
Cytoband11q12.1
Allele length
AssemblyAllele length
hg3871245
hg1971245
hg1871245
hg1771245
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv508633
Supporting Variants
SamplesNA18994
Known GenesBTBD18, C11orf31, CTNND1, TMX2, TMX2-CTNND1
MethodOptical mapping
AnalysisSingle-molecule optical maps were assembled into genome-wide consensus maps. These consensus maps were compared to a restriction map generated from the NCBI b35 human genome reference sequence.
PlatformOptical Mapping
Comments
ReferenceTeague_et_al_2010
Pubmed ID20534489
Accession Number(s)nssv622485
Frequency
Sample Size4
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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