A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv621790



Internal ID15819013
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr5:55656974..55662974hg38UCSC Ensembl
Outerchr5:54952802..54958802hg19UCSC Ensembl
Outerchr5:54988559..54994559hg18UCSC Ensembl
Outerchr5:54988559..54994559hg17UCSC Ensembl
Cytoband5q11.2
Allele length
AssemblyAllele length
hg386001
hg196001
hg186001
hg176001
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv507253
Supporting Variants
SamplesNA10860
Known GenesSLC38A9
MethodOptical mapping
AnalysisSingle-molecule optical maps were assembled into genome-wide consensus maps. These consensus maps were compared to a restriction map generated from the NCBI b35 human genome reference sequence.
PlatformOptical Mapping
Comments
ReferenceTeague_et_al_2010
Pubmed ID20534489
Accession Number(s)nssv621790
Frequency
Sample Size4
Observed Gain0
Observed Loss0
Observed Complex0
Frequencyn/a


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