A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv617667



Internal ID15816822
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr5:34029485..34035485hg38UCSC Ensembl
Outerchr5:34029590..34035590hg19UCSC Ensembl
Outerchr5:34065347..34071347hg18UCSC Ensembl
Outerchr5:34065347..34071347hg17UCSC Ensembl
Cytoband5p13.2
Allele length
AssemblyAllele length
hg386001
hg196001
hg186001
hg176001
Variant TypeOTHER sequence alteration
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv507243
Supporting Variants
SamplesCHM
Known GenesC1QTNF3, C1QTNF3-AMACR
MethodOptical mapping
AnalysisSingle-molecule optical maps were assembled into genome-wide consensus maps. These consensus maps were compared to a restriction map generated from the NCBI b35 human genome reference sequence.
PlatformOptical Mapping
Comments
ReferenceTeague_et_al_2010
Pubmed ID20534489
Accession Number(s)nssv617667
Frequency
Sample Size4
Observed Gain0
Observed Loss0
Observed Complex0
Frequencyn/a


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