A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv586252



Internal ID15467775
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr10:76495814..76501268hg38UCSC Ensembl
chr10:78255572..78261026hg19UCSC Ensembl
chr10:77925578..77931032hg18UCSC Ensembl
Cytoband10q22.3
Allele length
AssemblyAllele length
hg385455
hg195455
hg185455
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv498734
Supporting Variants
Samples
Known GenesC10orf11
MethodSequencing
AnalysisFor each individuals we constructed a whole genomic library of approximately 1 million clones using a fosdmid subcloning strategy Paried end sequences from each clone were sequenced and searched against NCBI build35. Individual fosmid clones corresponding to regions of structural difference relative to the genome reference were selected and sequenced. The breakpoints determined from complete fosmid sequencing are given using the NCBI build36 genome assembly.
PlatformCapillary
Comments
ReferenceKidd_et_al_2010b
Pubmed ID21111241
Accession Number(s)nssv586252
Frequency
Sample Size9
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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