A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv585902



Internal ID15814111
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr4:56673800..56678570hg38UCSC Ensembl
chr4:57539966..57544736hg19UCSC Ensembl
chr4:57234723..57239493hg18UCSC Ensembl
Cytoband4q12
Allele length
AssemblyAllele length
hg384771
hg194771
hg184771
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv499041
Supporting Variants
Samples
Known GenesHOPX
MethodSequencing
AnalysisFor each individuals we constructed a whole genomic library of approximately 1 million clones using a fosdmid subcloning strategy Paried end sequences from each clone were sequenced and searched against NCBI build35. Individual fosmid clones corresponding to regions of structural difference relative to the genome reference were selected and sequenced. The breakpoints determined from complete fosmid sequencing are given using the NCBI build36 genome assembly.
PlatformCapillary
Comments
ReferenceKidd_et_al_2010b
Pubmed ID21111241
Accession Number(s)nssv585902
Frequency
Sample Size9
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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