A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv585595



Internal ID15466905
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:154342143..154390306hg38UCSC Ensembl
chrX:153570511..153618666hg19UCSC Ensembl
chrX:153223705..153271860hg18UCSC Ensembl
CytobandXq28
Allele length
AssemblyAllele length
hg3848164
hg1948156
hg1848156
Variant TypeOTHER inversion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv499482
Supporting Variants
Samples
Known GenesEMD, FLNA
MethodSequencing
AnalysisFor each individuals we constructed a whole genomic library of approximately 1 million clones using a fosdmid subcloning strategy Paried end sequences from each clone were sequenced and searched against NCBI build35. Individual fosmid clones corresponding to regions of structural difference relative to the genome reference were selected and sequenced. The breakpoints determined from complete fosmid sequencing are given using the NCBI build36 genome assembly.
PlatformCapillary
Comments
ReferenceKidd_et_al_2010b
Pubmed ID21111241
Accession Number(s)nssv585595
Frequency
Sample Size9
Observed Gain0
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer