A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv558578



Internal ID15234471
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr19:18434815..18438133hg38UCSC Ensembl
Outerchr19:18545625..18548943hg19UCSC Ensembl
Outerchr19:18406625..18409943hg18UCSC Ensembl
Outerchr19:18406625..18409943hg17UCSC Ensembl
Cytoband19p13.11
Allele length
AssemblyAllele length
hg383319
hg193319
hg183319
hg173319
Variant TypeCNV gain
Copy Number3
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsnsv482217
Supporting Variants
SamplesKB1
Known GenesISYNA1
MethodSequencing
AnalysisWe constructed duplication maps for the KB1 genome and estimated the absolute copy number of each duplication interval larger than 20 kb in length. Using absolute estimates of copy number, we calculated an in silico log2 ratio for each the KB1 genome and compared copy number predictions with previously published copy numbers detected in NA18507 and YH genomes.
PlatformIllumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen
CommentsISYNA1
ReferenceSchuster_et_al_2010
Pubmed ID20164927
Accession Number(s)nssv558578
Frequency
Sample Size1
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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