A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv558550



Internal ID15234443
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr16:5084301..5097788hg38UCSC Ensembl
Outerchr16:5134302..5147789hg19UCSC Ensembl
Outerchr16:5074303..5087790hg18UCSC Ensembl
Outerchr16:5074303..5087790hg17UCSC Ensembl
Cytoband16p13.3
Allele length
AssemblyAllele length
hg3813488
hg1913488
hg1813488
hg1713488
Variant TypeCNV gain
Copy Number21
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsnsv482189
Supporting Variants
SamplesKB1
Known GenesALG1, FAM86A
MethodSequencing
AnalysisWe constructed duplication maps for the KB1 genome and estimated the absolute copy number of each duplication interval larger than 20 kb in length. Using absolute estimates of copy number, we calculated an in silico log2 ratio for each the KB1 genome and compared copy number predictions with previously published copy numbers detected in NA18507 and YH genomes.
PlatformIllumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen
CommentsFAM86A
ReferenceSchuster_et_al_2010
Pubmed ID20164927
Accession Number(s)nssv558550
Frequency
Sample Size1
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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