A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv558548



Internal ID15234441
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr16:2783953..2786707hg38UCSC Ensembl
Outerchr16:2833954..2836708hg19UCSC Ensembl
Outerchr16:2773955..2776709hg18UCSC Ensembl
Outerchr16:2773955..2776709hg17UCSC Ensembl
Cytoband16p13.3
Allele length
AssemblyAllele length
hg382755
hg192755
hg182755
hg172755
Variant TypeCNV gain
Copy Number3
Allele State
Allele Origin
Probe Count
Validation Flag1
Merged StatusS
Merged Variantsnsv482187
Supporting Variants
SamplesKB1
Known GenesPRSS33
MethodSequencing
AnalysisWe constructed duplication maps for the KB1 genome and estimated the absolute copy number of each duplication interval larger than 20 kb in length. Using absolute estimates of copy number, we calculated an in silico log2 ratio for each the KB1 genome and compared copy number predictions with previously published copy numbers detected in NA18507 and YH genomes.
PlatformIllumina Genome Analyzer and Roche/454 sequencer. For arrayCGH validation experiments we used Nimblegen
CommentsPRSS33
ReferenceSchuster_et_al_2010
Pubmed ID20164927
Accession Number(s)nssv558548
Frequency
Sample Size1
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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