A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv549882



Internal ID15212758
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr16:70071589..70222996hg38UCSC Ensembl
Innerchr16:70105492..70256899hg19UCSC Ensembl
Innerchr16:68662993..68814400hg18UCSC Ensembl
Innerchr16:69881697..70033105hg16UCSC Ensembl
Cytoband16q22.1
Allele length
AssemblyAllele length
hg38151408
hg19151408
hg18151408
hg16151409
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv471695
Supporting Variants
SamplesNA10971
Known GenesCLEC18C, LOC100506060, PDPR
MethodBAC aCGH
AnalysisArray image analysis and normalization were performed using UCSF Spot and Sproc software (Jain et al. 2002). BACs for which only one of the triplicates printed on the array yielded data, or for which the standard deviation of log2 ratio for the triplicates was 10.2, were removed from final analysis. Furthermore, we discarded BACs that failed to yield data in <20% of cases. For each hybridization experiment, we established a threshold log2 ratio of 2 SDs from the mean of all autosomal clones, and BACs that exceeded this threshold in both independent dye-swap experiments were classified as variant.
PlatformGPL4010
Comments
ReferenceSharp_et_al_2005
Pubmed ID15918152
Accession Number(s)nssv549882
Frequency
Sample Size48
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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