A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv544247



Internal ID15512748
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:37848227..38793606hg38UCSC Ensembl
Innerchr12:38242029..39187408hg19UCSC Ensembl
Innerchr12:36528296..37473675hg18UCSC Ensembl
Innerchr12:36528296..37473675hg17UCSC Ensembl
Cytoband12q12
Allele length
AssemblyAllele length
hg38945380
hg19945380
hg18945380
hg17945380
Variant TypeCNV gain
Copy Number3
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv469356
Supporting Variants
SamplesNINDS_6
Known GenesALG10B, CPNE8
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv544247
Frequency
Sample Size1557
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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