A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv543996



Internal ID15159226
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr12:2136470..2142107hg38UCSC Ensembl
Innerchr12:2245636..2251273hg19UCSC Ensembl
Innerchr12:2115897..2121534hg18UCSC Ensembl
Innerchr12:2115897..2121534hg17UCSC Ensembl
Cytoband12p13.33
Allele length
AssemblyAllele length
hg385638
hg195638
hg185638
hg175638
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv468971
Supporting Variants
SamplesHGDP00277
Known GenesCACNA1C
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv543996
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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