Variant Details

Variant: nssv543966

Internal ID

15504800

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr11:134479860..134849175	hg38	UCSC Ensembl
Inner	chr11:134349754..134719069	hg19	UCSC Ensembl
Inner	chr11:133854964..134224279	hg18	UCSC Ensembl
Inner	chr11:133854964..134224279	hg17	UCSC Ensembl

Cytoband

11q25

Allele length

Assembly	Allele length
hg38	369316
hg19	369316
hg18	369316
hg17	369316

Variant Type

CNV gain

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

nsv468922

Supporting Variants

Samples

1798860280_A

Known Genes

LOC283177

Method

SNP array

Analysis

An HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.

Platform

Not reported

Comments

Reference

Itsara_et_al_2009

Pubmed ID

19166990

Accession Number(s)

nssv543966

Frequency

Sample Size	1557
Observed Gain	1
Observed Loss	0
Observed Complex	0
Frequency	n/a