A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv543955



Internal ID15165798
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:134288851..134339014hg38UCSC Ensembl
Innerchr11:134158745..134208908hg19UCSC Ensembl
Innerchr11:133663955..133714118hg18UCSC Ensembl
Innerchr11:133663955..133714118hg17UCSC Ensembl
Cytoband11q25
Allele length
AssemblyAllele length
hg3850164
hg1950164
hg1850164
hg1750164
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv468906
Supporting Variants
SamplesNINDS_26
Known GenesGLB1L2, GLB1L3
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv543955
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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