Variant Details

Variant: nssv543947

Internal ID

15503828

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr11:131055122..131100648	hg38	UCSC Ensembl
Inner	chr11:130925017..130970543	hg19	UCSC Ensembl
Inner	chr11:130430227..130475753	hg18	UCSC Ensembl
Inner	chr11:130430227..130475753	hg17	UCSC Ensembl

Cytoband

11q25

Allele length

Assembly	Allele length
hg38	45527
hg19	45527
hg18	45527
hg17	45527

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

nsv468897

Supporting Variants

Samples

1780862433_A

Known Genes

Method

SNP array

Analysis

An HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.

Platform

Not reported

Comments

Reference

Itsara_et_al_2009

Pubmed ID

19166990

Accession Number(s)

nssv543947

Frequency

Sample Size	1557
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a