A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv543892



Internal ID15512004
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:98683202..98724905hg38UCSC Ensembl
Innerchr11:98553932..98595635hg19UCSC Ensembl
Innerchr11:98059142..98100845hg18UCSC Ensembl
Innerchr11:98059142..98100845hg17UCSC Ensembl
Cytoband11q22.1
Allele length
AssemblyAllele length
hg3841704
hg1941704
hg1841704
hg1741704
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv468814
Supporting Variants
SamplesNINDS_183
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv543892
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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