A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv543025



Internal ID15156373
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr11:55572353..55679951hg38UCSC Ensembl
Innerchr11:55339829..55447427hg19UCSC Ensembl
Innerchr11:55096405..55204003hg18UCSC Ensembl
Innerchr11:55096405..55204003hg17UCSC Ensembl
Cytoband11q11
Allele length
AssemblyAllele length
hg38107599
hg19107599
hg18107599
hg17107599
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv467887
Supporting Variants
Samples1780862071_A
Known GenesOR4C11, OR4C16, OR4C6, OR4P4, OR4S2
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv543025
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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