Variant Details

Variant: nssv542975

Internal ID

15156132

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr11:33043848..33455157	hg38	UCSC Ensembl
Inner	chr11:33065394..33476703	hg19	UCSC Ensembl
Inner	chr11:33021970..33433279	hg18	UCSC Ensembl
Inner	chr11:33021970..33433279	hg17	UCSC Ensembl

Cytoband

11p13

Allele length

Assembly	Allele length
hg38	411310
hg19	411310
hg18	411310
hg17	411310

Variant Type

CNV gain

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

nsv467786

Supporting Variants

Samples

1780854545_A

Known Genes

CSTF3, CSTF3-AS1, HIPK3, LINC00294, TCP11L1

Method

SNP array

Analysis

An HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.

Platform

Not reported

Comments

Reference

Itsara_et_al_2009

Pubmed ID

19166990

Accession Number(s)

nssv542975

Frequency

Sample Size	1557
Observed Gain	1
Observed Loss	0
Observed Complex	0
Frequency	n/a