A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv542766



Internal ID15166028
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:128091905..128108100hg38UCSC Ensembl
Innerchr10:129890169..129906364hg19UCSC Ensembl
Innerchr10:129780159..129796354hg18UCSC Ensembl
Innerchr10:129780159..129796354hg17UCSC Ensembl
Cytoband10q26.2
Allele length
AssemblyAllele length
hg3816196
hg1916196
hg1816196
hg1716196
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv467481
Supporting Variants
SamplesNINDS_54
Known GenesMKI67
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv542766
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer