A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv542762



Internal ID15157464
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:125621256..125726016hg38UCSC Ensembl
Innerchr10:127309825..127414585hg19UCSC Ensembl
Innerchr10:127299815..127404575hg18UCSC Ensembl
Innerchr10:127299815..127404575hg17UCSC Ensembl
Cytoband10q26.13
Allele length
AssemblyAllele length
hg38104761
hg19104761
hg18104761
hg17104761
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv467476
Supporting Variants
Samples1780862576_A
Known GenesC10orf137, FLJ37035, LOC283038, TEX36
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv542762
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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