A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv542660



Internal ID15511272
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:66575771..66837372hg38UCSC Ensembl
Innerchr10:68335529..68597130hg19UCSC Ensembl
Innerchr10:68005535..68267136hg18UCSC Ensembl
Innerchr10:68005535..68267136hg17UCSC Ensembl
Cytoband10q21.3
Allele length
AssemblyAllele length
hg38261602
hg19261602
hg18261602
hg17261602
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv467341
Supporting Variants
SamplesHGDP01380
Known GenesCTNNA3
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv542660
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer