Variant DetailsVariant: nssv542430Internal ID | 15163254 | Landmark | | Location Information | | Cytoband | 1q31.2 | Allele length | Assembly | Allele length | hg38 | 1158021 | hg19 | 1158021 | hg18 | 1158021 | hg17 | 1158021 |
| Variant Type | CNV loss | Copy Number | 1 | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | S | Merged Variants | nsv466994 | Supporting Variants | | Samples | HGDP01156 | Known Genes | B3GALT2, CDC73, GLRX2, MIR1278, RGS1, RGS13, RGS2, TROVE2, UCHL5 | Method | SNP array | Analysis | An HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives. | Platform | Not reported | Comments | | Reference | Itsara_et_al_2009 | Pubmed ID | 19166990 | Accession Number(s) | nssv542430
| Frequency | Sample Size | 1557 | Observed Gain | 0 | Observed Loss | 1 | Observed Complex | 0 | Frequency | n/a |
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