A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv542357



Internal ID15161750
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:46172086..46279254hg38UCSC Ensembl
Innerchr10:47543322..47650490hg19UCSC Ensembl
Innerchr10:47013328..47120496hg18UCSC Ensembl
Innerchr10:47013328..47120496hg17UCSC Ensembl
Cytoband10q11.22
Allele length
AssemblyAllele length
hg38107169
hg19107169
hg18107169
hg17107169
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv466919
Supporting Variants
SamplesHGDP00822
Known GenesANTXRLP1
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv542357
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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