A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv542210



Internal ID15157086
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:13511345..13563368hg38UCSC Ensembl
Innerchr10:13553345..13605368hg19UCSC Ensembl
Innerchr10:13593351..13645374hg18UCSC Ensembl
Innerchr10:13593351..13645374hg17UCSC Ensembl
Cytoband10p13
Allele length
AssemblyAllele length
hg3852024
hg1952024
hg1852024
hg1752024
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv466743
Supporting Variants
Samples1780862415_A
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv542210
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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