A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv542202



Internal ID15505011
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:9011169..9065172hg38UCSC Ensembl
Innerchr10:9053132..9107135hg19UCSC Ensembl
Innerchr10:9093138..9147141hg18UCSC Ensembl
Innerchr10:9093138..9147141hg17UCSC Ensembl
Cytoband10p14
Allele length
AssemblyAllele length
hg3854004
hg1954004
hg1854004
hg1754004
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv466732
Supporting Variants
SamplesHGDP00021
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv542202
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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