A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv542153



Internal ID15509340
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:135698292..135752357hg38UCSC Ensembl
Innerchr9:138590138..138644203hg19UCSC Ensembl
Innerchr9:137729959..137784024hg18UCSC Ensembl
Innerchr9:135816083..135870148hg17UCSC Ensembl
Cytoband9q34.3
Allele length
AssemblyAllele length
hg3854066
hg1954066
hg1854066
hg1754066
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv466667
Supporting Variants
SamplesHGDP00977
Known GenesKCNT1, SOHLH1
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv542153
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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