A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv542099



Internal ID15511551
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:129451380..129498071hg38UCSC Ensembl
Innerchr9:132213659..132260350hg19UCSC Ensembl
Innerchr9:131253480..131300171hg18UCSC Ensembl
Innerchr9:129293213..129339904hg17UCSC Ensembl
Cytoband9q34.11
Allele length
AssemblyAllele length
hg3846692
hg1946692
hg1846692
hg1746692
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv466588
Supporting Variants
SamplesNINDS_111
Known GenesLINC00963
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv542099
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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