Variant Details

Variant: nssv542041

Internal ID

15502466

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr9:113681989..113709956	hg38	UCSC Ensembl
Inner	chr9:116444269..116472236	hg19	UCSC Ensembl
Inner	chr9:115484090..115512057	hg18	UCSC Ensembl
Inner	chr9:113523823..113551790	hg17	UCSC Ensembl

Cytoband

9q32

Allele length

Assembly	Allele length
hg38	27968
hg19	27968
hg18	27968
hg17	27968

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

nsv466513

Supporting Variants

Samples

1780854392_A

Known Genes

Method

SNP array

Analysis

An HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.

Platform

Not reported

Comments

Reference

Itsara_et_al_2009

Pubmed ID

19166990

Accession Number(s)

nssv542041

Frequency

Sample Size	1557
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a