A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv542039



Internal ID15504191
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:113601597..113635117hg38UCSC Ensembl
Innerchr9:116363877..116397397hg19UCSC Ensembl
Innerchr9:115403698..115437218hg18UCSC Ensembl
Innerchr9:113443431..113476951hg17UCSC Ensembl
Cytoband9q32
Allele length
AssemblyAllele length
hg3833521
hg1933521
hg1833521
hg1733521
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv466510
Supporting Variants
Samples1780862585_A
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv542039
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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