Variant Details

Variant: nssv542019

Internal ID

15512338

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr9:112953875..112983376	hg38	UCSC Ensembl
Inner	chr9:115716155..115745656	hg19	UCSC Ensembl
Inner	chr9:114755976..114785477	hg18	UCSC Ensembl
Inner	chr9:112795710..112825211	hg17	UCSC Ensembl

Cytoband

9q32

Allele length

Assembly	Allele length
hg38	29502
hg19	29502
hg18	29502
hg17	29502

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

nsv466489

Supporting Variants

Samples

NINDS_232

Known Genes

Method

SNP array

Analysis

An HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.

Platform

Not reported

Comments

Reference

Itsara_et_al_2009

Pubmed ID

19166990

Accession Number(s)

nssv542019

Frequency

Sample Size	1557
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a