A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv542007



Internal ID15502898
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:107198272..107224798hg38UCSC Ensembl
Innerchr9:109960553..109987079hg19UCSC Ensembl
Innerchr9:109000374..109026900hg18UCSC Ensembl
Innerchr9:107040108..107066634hg17UCSC Ensembl
Cytoband9q31.2
Allele length
AssemblyAllele length
hg3826527
hg1926527
hg1826527
hg1726527
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv466477
Supporting Variants
Samples1780854599_A
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv542007
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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