A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv542001



Internal ID15504332
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:103715214..103796936hg38UCSC Ensembl
Innerchr9:106477496..106559217hg19UCSC Ensembl
Innerchr9:105517317..105599038hg18UCSC Ensembl
Innerchr9:103557051..103638772hg17UCSC Ensembl
Cytoband9q31.1
Allele length
AssemblyAllele length
hg3881723
hg1981722
hg1881722
hg1781722
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv466459
Supporting Variants
Samples1782681096_A
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv542001
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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