A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv541987



Internal ID15504526
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:101132879..101160903hg38UCSC Ensembl
Innerchr9:103895161..103923185hg19UCSC Ensembl
Innerchr9:102934982..102963006hg18UCSC Ensembl
Innerchr9:100974716..101002740hg17UCSC Ensembl
Cytoband9q31.1
Allele length
AssemblyAllele length
hg3828025
hg1928025
hg1828025
hg1728025
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv466443
Supporting Variants
Samples1782681287_A
Known GenesLPPR1
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv541987
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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