A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv541981



Internal ID15162096
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:94581338..94606867hg38UCSC Ensembl
Innerchr9:97343620..97369149hg19UCSC Ensembl
Innerchr9:96383441..96408970hg18UCSC Ensembl
Innerchr9:94423175..94448704hg17UCSC Ensembl
Cytoband9q22.32
Allele length
AssemblyAllele length
hg3825530
hg1925530
hg1825530
hg1725530
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv466436
Supporting Variants
SamplesHGDP00897
Known GenesFBP1, FBP2
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv541981
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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