A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv541979



Internal ID15503153
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:89646949..89675959hg38UCSC Ensembl
Innerchr9:92261864..92290874hg19UCSC Ensembl
Innerchr9:91451684..91480694hg18UCSC Ensembl
Innerchr9:89491418..89520428hg17UCSC Ensembl
Cytoband9q22.2
Allele length
AssemblyAllele length
hg3829011
hg1929011
hg1829011
hg1729011
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv466433
Supporting Variants
Samples1780862093_A
Known GenesUNQ6494
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv541979
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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