A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv541966



Internal ID15511962
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:71142654..71153632hg38UCSC Ensembl
Innerchr9:73757570..73768548hg19UCSC Ensembl
Innerchr9:72947390..72958368hg18UCSC Ensembl
Innerchr9:70987124..70998102hg17UCSC Ensembl
Cytoband9q21.12
Allele length
AssemblyAllele length
hg3810979
hg1910979
hg1810979
hg1710979
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv466418
Supporting Variants
SamplesNINDS_174
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv541966
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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