A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv541904



Internal ID15164271
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:26643037..26689444hg38UCSC Ensembl
Innerchr9:26643035..26689442hg19UCSC Ensembl
Innerchr9:26633035..26679442hg18UCSC Ensembl
Innerchr9:26633035..26679442hg17UCSC Ensembl
Cytoband9p21.2
Allele length
AssemblyAllele length
hg3846408
hg1946408
hg1846408
hg1746408
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv466331
Supporting Variants
SamplesHGDP01330
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv541904
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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