A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv541899



Internal ID15156218
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:25919853..25971499hg38UCSC Ensembl
Innerchr9:25919851..25971497hg19UCSC Ensembl
Innerchr9:25909851..25961497hg18UCSC Ensembl
Innerchr9:25909851..25961497hg17UCSC Ensembl
Cytoband9p21.2
Allele length
AssemblyAllele length
hg3851647
hg1951647
hg1851647
hg1751647
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv466323
Supporting Variants
Samples1780862001_A
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv541899
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer